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refactor(features)!: collapse consensus features, repair reduced-feature CI, and structural fixes (1/6) - #458

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nh13 merged 4 commits into
feat-runallfrom
nh/runall-fix-1-foundation
Jun 25, 2026
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refactor(features)!: collapse consensus features, repair reduced-feature CI, and structural fixes (1/6)#458
nh13 merged 4 commits into
feat-runallfrom
nh/runall-fix-1-foundation

fix(bam-io): fix BAI sidecar path naming for non-.bam outputs

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Codecov Report

❌ Patch coverage is 95.77465% with 3 lines in your changes missing coverage. Please review.
⚠️ Please upload report for BASE (feat-runall@59d15ee). Learn more about missing BASE report.

Files with missing lines Patch % Lines
src/lib/pipeline/chains/builder.rs 77.77% 2 Missing ⚠️
src/lib/commands/common.rs 92.30% 1 Missing ⚠️
Additional details and impacted files
@@              Coverage Diff               @@
##             feat-runall     #458   +/-   ##
==============================================
  Coverage               ?   93.96%           
==============================================
  Files                  ?      109           
  Lines                  ?    48466           
  Branches               ?        0           
==============================================
  Hits                   ?    45540           
  Misses                 ?     2926           
  Partials               ?        0           

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