Add Needleman-Wunsch distance as a faster alignment metric - #725
Draft
felixpetschko wants to merge 29 commits into
Draft
Add Needleman-Wunsch distance as a faster alignment metric#725felixpetschko wants to merge 29 commits into
felixpetschko wants to merge 29 commits into
Codecov / codecov/project
succeeded
Aug 6, 2026 in 0s
77.21% (target 1.00%)
View this Pull Request on Codecov
77.21% (target 1.00%)
Details
Codecov Report
❌ Patch coverage is 52.17391% with 88 lines in your changes missing coverage. Please review.
✅ Project coverage is 77.21%. Comparing base (efe49e6) to head (c1f2f33).
| Files with missing lines | Patch % | Lines |
|---|---|---|
| src/scirpy/ir_dist/metrics.py | 36.49% | 87 Missing |
| src/scirpy/ir_dist/_substitution_matrices.py | 97.77% | 1 Missing |
Additional details and impacted files
@@ Coverage Diff @@
## main #725 +/- ##
==========================================
- Coverage 78.30% 77.21% -1.09%
==========================================
Files 51 52 +1
Lines 4628 4789 +161
==========================================
+ Hits 3624 3698 +74
- Misses 1004 1091 +87 | Files with missing lines | Coverage Δ | |
|---|---|---|
| src/scirpy/ir_dist/__init__.py | 93.13% <100.00%> (+0.13%) |
⬆️ |
| src/scirpy/ir_dist/_substitution_matrices.py | 97.77% <97.77%> (ø) |
|
| src/scirpy/ir_dist/metrics.py | 51.48% <36.49%> (-5.20%) |
⬇️ |
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