diff --git a/pyproject.toml b/pyproject.toml
index 213d1a9..bf772f8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -37,7 +37,7 @@ features = ["pyo3/extension-module"]
 asyncio_mode = "auto"
 
 [tool.uv.sources]
-virtool = { git = "https://github.com/virtool/virtool", tag = "39.63.0" }
+virtool = { git = "https://github.com/virtool/virtool", tag = "41.1.0" }
 
 [build-system]
 requires = ["maturin>=1.14.1,<2.0"]
diff --git a/tests/test_workflow.py b/tests/test_workflow.py
index 657ab28..976254c 100644
--- a/tests/test_workflow.py
+++ b/tests/test_workflow.py
@@ -363,7 +363,7 @@ async def index(workflow_data: WorkflowData, work_path: Path):
 
     return await WFIndex.create(
         workflow_data.index.id,
-        work_path / "indexes" / workflow_data.index.id / "index.sqlite",
+        work_path / "indexes" / str(workflow_data.index.id) / "index.sqlite",
         None,
         otus,
     )
diff --git a/uv.lock b/uv.lock
index a0a7942..10da4ee 100644
--- a/uv.lock
+++ b/uv.lock
@@ -369,11 +369,11 @@ wheels = [
 
 [[package]]
 name = "dictdiffer"
-version = "0.9.0"
+version = "0.10.0"
 source = { registry = "https://pypi.org/simple" }
-sdist = { url = "https://files.pythonhosted.org/packages/61/7b/35cbccb7effc5d7e40f4c55e2b79399e1853041997fcda15c9ff160abba0/dictdiffer-0.9.0.tar.gz", hash = "sha256:17bacf5fbfe613ccf1b6d512bd766e6b21fb798822a133aa86098b8ac9997578", size = 31513, upload-time = "2021-07-22T13:24:29.276Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/0c/31/84b2b2113c2c972431582bffd74f0d04b5efd9126538127b766275580950/dictdiffer-0.10.0.tar.gz", hash = "sha256:0b912acf663949d73b820d3ed59362140a188ab742c94efe13c762dbd24cbbd3", size = 12451, upload-time = "2026-07-16T12:39:07.886Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/47/ef/4cb333825d10317a36a1154341ba37e6e9c087bac99c1990ef07ffdb376f/dictdiffer-0.9.0-py2.py3-none-any.whl", hash = "sha256:442bfc693cfcadaf46674575d2eba1c53b42f5e404218ca2c2ff549f2df56595", size = 16754, upload-time = "2021-07-22T13:24:26.783Z" },
+    { url = "https://files.pythonhosted.org/packages/9c/2f/7ff60ad2cafd7c970bea75da5f4a9b84b784f7340abcb5fc634d4cf5cd37/dictdiffer-0.10.0-py3-none-any.whl", hash = "sha256:6ca50f38f7c5ee27d52789eee095ae473d9e02e1aa7612cb3aaf25fcf081dbf6", size = 16060, upload-time = "2026-07-16T12:39:06.842Z" },
 ]
 
 [[package]]
@@ -422,14 +422,14 @@ wheels = [
 
 [[package]]
 name = "faker"
-version = "40.28.1"
+version = "40.32.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "tzdata", marker = "sys_platform == 'win32'" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/cc/2d/3ead106cef42eab305e15f9c089dcc68a40387d5ce04af18585af4ebbb44/faker-40.28.1.tar.gz", hash = "sha256:2a63fb51abab8790636d4030a094cf942404cbccc9c288d1cad70e2e3e9ecd58", size = 2022717, upload-time = "2026-07-01T22:23:43.763Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/42/cd/bfa4f0a397c4d34f5b6c8e7ac02832f9be5679a1f0c9a7642f2338e85a4e/faker-40.32.0.tar.gz", hash = "sha256:78271bfa3a0e982f1b90e1345b2b8f4a04a132864e0372262074e60c2cddd4ef", size = 2024472, upload-time = "2026-07-20T21:40:12.278Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/92/a6/6111b9f13c1564b0e2f5dbeeb611fd00dc731e6add2336f62b798598c73d/faker-40.28.1-py3-none-any.whl", hash = "sha256:e8d3f5c469100a553d246dce7937c291308068a5ec6c9c3a228d7878b50720be", size = 2061052, upload-time = "2026-07-01T22:23:41.946Z" },
+    { url = "https://files.pythonhosted.org/packages/8a/d1/2df16a41d5e3521442ac8713d0488235d54bb81a09d4fd1159e6dd7f3a41/faker-40.32.0-py3-none-any.whl", hash = "sha256:2fd913ad02dabbea84d729937db68f9ca9773dce93cec45f1fd6fe0fd1b41840", size = 2062161, upload-time = "2026-07-20T21:40:10.436Z" },
 ]
 
 [[package]]
@@ -1045,15 +1045,15 @@ wheels = [
 
 [[package]]
 name = "sentry-sdk"
-version = "2.65.0"
+version = "2.66.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "certifi" },
     { name = "urllib3" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/f1/1f/ed17a390348156ca99fe622b97cd7d2f1969b5f49df89084b0f28e7953e9/sentry_sdk-2.65.0.tar.gz", hash = "sha256:c94dc945d54bad49d4f20448b1e6b217ca2f92f46d05c3e83d41764af685c3d1", size = 932133, upload-time = "2026-07-13T11:33:19.92Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/48/ff/670abe04c5072719b5060ed93851d0d69525d60f8f2c5810f8becd58f9c1/sentry_sdk-2.66.0.tar.gz", hash = "sha256:9727d35aa83c56cd53294676fe65b96296a334c9ce107fa2142bd70f47acb265", size = 935745, upload-time = "2026-07-16T12:42:04.663Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/21/3b/326ad4c03b5da89b5124c8890af66e8119c4d2e10abc0619e0d67d9f7c7f/sentry_sdk-2.65.0-py3-none-any.whl", hash = "sha256:3595169677a808e4d0e1ea6ffb89443459549c7a98392ed71c77c847182ab6bf", size = 503869, upload-time = "2026-07-13T11:33:17.71Z" },
+    { url = "https://files.pythonhosted.org/packages/c7/bb/49b10783f29067da2eec179320617e94faf63196609de47aeab3c26c3325/sentry_sdk-2.66.0-py3-none-any.whl", hash = "sha256:096136c214c602be2b323524d30755dc5b30ec5a218a206207f33b12c05c6f11", size = 504769, upload-time = "2026-07-16T12:42:02.919Z" },
 ]
 
 [[package]]
@@ -1170,7 +1170,7 @@ wheels = [
 [[package]]
 name = "virtool"
 version = "0.0.0"
-source = { git = "https://github.com/virtool/virtool?tag=39.63.0#9d38725682cdc5528753284d8b6e4e234cba086d" }
+source = { git = "https://github.com/virtool/virtool?tag=41.1.0#a5bda26785eaacaf3b2193d77cb103d178f0543a" }
 dependencies = [
     { name = "aiofiles" },
     { name = "aiohttp", extra = ["speedups"] },
@@ -1235,7 +1235,7 @@ dev = [
 ]
 
 [package.metadata]
-requires-dist = [{ name = "virtool", git = "https://github.com/virtool/virtool?tag=39.63.0" }]
+requires-dist = [{ name = "virtool", git = "https://github.com/virtool/virtool?tag=41.1.0" }]
 
 [package.metadata.requires-dev]
 dev = [