Description
I would like to query a pangenome graph for haplotype/allele walks that traverse a specific snarl.
Input:
- snarl entry node id and exit node id, ideally in a file which may contain node ids for one or multiple snarls
Output:
- all haplotype/allele walks (with sample IDs) that traverse the snarl
Questions
- Does
vg already support this query in some form?If yes, what is the recommended command or workflow?
- If not exposed via CLI, is there an internal API or library function that provides this?
Description
I would like to query a pangenome graph for haplotype/allele walks that traverse a specific snarl.
Input:
Output:
Questions
vgalready support this query in some form?If yes, what is the recommended command or workflow?