From f19dc3576dea4506cf7c33ae41e10eafc0b568bb Mon Sep 17 00:00:00 2001 From: Harald Vohringer Date: Fri, 7 Aug 2026 18:47:24 +0200 Subject: [PATCH] ensure right fit object is in R scope --- src/pertpy/tools/_differential_gene_expression/_edger.py | 1 + 1 file changed, 1 insertion(+) diff --git a/src/pertpy/tools/_differential_gene_expression/_edger.py b/src/pertpy/tools/_differential_gene_expression/_edger.py index 88b3b04b..a682ca16 100644 --- a/src/pertpy/tools/_differential_gene_expression/_edger.py +++ b/src/pertpy/tools/_differential_gene_expression/_edger.py @@ -108,6 +108,7 @@ def _test_single_contrast(self, contrast: Sequence[float], **kwargs) -> pd.DataF with localconverter(get_conversion() + numpy2ri.converter) as cv: contrast_vec_r = cv.py2rpy(np.asarray(contrast)) ro.globalenv["contrast_vec"] = contrast_vec_r + ro.globalenv["fit"] = self.fit # Test contrast with R ro.r(