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    25 repositories

    • cardioscar

      Public
      Building/reconstructing scar via constrained interpolation innovation
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2026Sep 10, 2026

    • CemrgApp

      Public
      An Interactive Medical Imaging Platform with Image Processing and Computer Vision Toolkits for Cardiovascular Research.
      machine-learningimage-processingmedical-imaging
      machine-learningimage-processingmedical-imaging
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •9•25•19•4•Updated Sep 7, 2026Sep 7, 2026

    • cardio-form

      Public
      CardioForm: A whole heart segmentation pipeline for CINE MRI images (LAX2, LAX4, SAX)
      Python
      •0•1•0•0•Updated Aug 28, 2026Aug 28, 2026

    • cemrg-heartbuilder

      Public
      CEMRG HeartBuilder is a Python toolkit for creating personalized whole-heart models, streamlining segmentation, meshing, and post-processing workflows for cardi…
      Python
      •
      Other
      •1•2•3•0•Updated Aug 28, 2026Aug 28, 2026

    • pycemrg-image-analysis

      Public
      Python
      •0•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • cine2nifti

      Public
      A robust, installable Python package, with dcm2niix conversion component to convert CINE Triads (or Tetrads) into nifti.
      Python
      •0•0•0•0•Updated Aug 17, 2026Aug 17, 2026

    • pycemrg-model-creation

      Public
      A high-level framework for cardiac model creation and simulation setup. Part of the `pycemrg` suite.
      Python
      •
      Other
      •0•0•0•0•Updated Aug 13, 2026Aug 13, 2026

    • pycemrg-context

      Public
      Suite-level context for AI agents (like Claude Code) when working across the pycemrg library ecosystem.
      HTML
      •0•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • pycemrg

      Public
      General use libraries for CEMRG
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • pycemrg-meshing

      Public
      Meshing functionalities from the pycemrg suite
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 18, 2026Jun 18, 2026

    • meshtools3d

      Public
      meshtools3D is a c++ code, based on CGAL, to create 3D volumetric mesges from segmented images and to compute the wall thickness
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • cemrg-lab-guides

      Public
      CEMRG lab guides to setup new computers etc
      Ruby
      •0•0•0•0•Updated Jun 12, 2026Jun 12, 2026

    • cemrg.vtkjs.demo

      Public
      Demo of heart model for VR using vtk.js
      public-engagementcomputer-modellingheart-
      public-engagementcomputer-modellingheart-
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated May 9, 2026May 9, 2026

    • ventriscar-nnunet-ext

      Public
      Extension classes for LSTM implementation for nnunetv2 (Ventricular LGE segmentation)
      Python
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • ccta

      Public
      Whole Heart Anatomical Refinement from CCTA using Extrapolation and Parcellation [Hao Xu, et al (KCL)] https://doi.org/10.48550/arXiv.2111.09650
      Python
      •1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • cemrg-3d-printer-settings

      Public
      CEMRG 3D printer settings and wiki
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • vgurev-mechbench

      Public
      Fork of vgurev's mechbench repo
      MATLAB
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • cemrg_plugin_generator

      Public
      Create MITK plugins with this simple template
      Python
      •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • cemrg_wearable

      Public
      Library for the analysis of wearable data
      Python
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • vmtk

      Public
      the Vascular Modeling Toolkit
      C++
      •
      Other
      •187•0•0•0•Updated May 24, 2024May 24, 2024

    • code_patches

      Public
      Patches of MITK to build CemrgApp
      0•0•0•1•Updated May 8, 2024May 8, 2024

    • web.cemrg.demo

      Public
      CEMRG WebApp Demo
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 25, 2024Mar 25, 2024

    • cemrgapp_docker_build_env

      Public
      Build environment for CemrgApp using docker
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • resources

      Public
      Repository of SOP documents and default parameter files for CemrgApp
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • AR_pipeline

      Public
      Open-source pipeline to create augmented reality (AR) models from scientific data
      Python
      •
      Other
      •9•0•0•0•Updated Aug 7, 2023Aug 7, 2023
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