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Add presentations (#19)
* add recent presentations * fix qs and ws dependabot alerts (#11, #12) Add npm overrides for qs (>= 6.15.2, CVE-2026-8723) and ws (>= 8.20.1, CVE-2026-45736) to resolve medium-severity Dependabot alerts on transitive dependencies. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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impact/presentations.md

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## Talks
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- _Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes (June 2026)_
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A talk presented by [Dr. Robert A Petit III](https://www.robertpetit.com) at the
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[Centre for Pathogen Genomics Bioinformatics Seminar](https://biomedicalsciences.unimelb.edu.au/departments/microbiology-Immunology/research/centre-for-pathogen-genomics). This talk provided a full overview of Bactopia. Including the main pipeline, Bactopia Tools, and the external libraries (e.g. bactopia-py, nf-bactopia). A look into LLM usage in Bactopia was also provided.
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Slides: [PDF](https://datasets.bactopia.io/media/2026-rp3-cpg-binfies-bactopia.pdf)
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- _How we avoided AI slop in Bactopia (April 2026)_
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A talk presented by [Dr. Robert A Petit III](https://www.robertpetit.com) at the [Nextflow Summit Boston 2026](https://summit.nextflow.io/2026/boston/overview/). This talk walked through growing pains of utilizing LLMs during the development of Bactopia, as well as the steps to ensure effective usage of LLMs in the future.
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Video: _coming soon!_
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Video: [YouTube](https://www.youtube.com/watch?v=m_AwgTzVBqY)
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Slides: [PDF](https://datasets.bactopia.io/media/2026-rp3-bactopia-nf-summit.pdf)
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- _Bactopia - Enhancing and expanding the Bactopia framework (October 2024)_
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## Posters
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- _Bactopia v4: A Scalable Bacterial Genome Surveillance Pipeline (May 2026)_
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A poster presented by [Dr. Robert A Petit III](https://www.robertpetit.com) at the [SFA²F 2026](https://www.sfafmeeting.org/) outlining the latest changes in Bactopia.
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Slides: [PDF](https://datasets.bactopia.io/media/2026-bactopia-poster.pdf)
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- _Bactopia v4: A Scalable Bacterial Genome Surveillance Pipeline (May 2026)_
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A poster presented by [Dr. Robert A Petit III](https://www.robertpetit.com) at the [APHL 2026](https://www.aphl.org/conferences/annualmeeting/Pages/default.aspx) outlining the latest changes in Bactopia.
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Slides: [PDF](https://datasets.bactopia.io/media/2026-bactopia-poster.pdf)

package-lock.json

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package.json

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},
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"overrides": {
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"serialize-javascript": "^7.0.5",
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"uuid": "^14.0.0"
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"uuid": "^14.0.0",
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"qs": "^6.15.2",
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"ws": "^8.20.1"
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}
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}

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